cogpy.io.xml_anat_map

Anatomical channel remapping from OpenEphys XML metadata.

Note

Lab-internal module. Assumes the OpenEphys XML anatomy layout used in the Bhatt Lab. Not part of the stable public API.

Functions

create_empty_anat_map(width, height)
detect_order(arr)	Detects the ordering of a 2D square array.
read_anat_map(xml_dict)	columnwise
remap_array(arr, anat_map, gridshape)	Remaps an array to a specified grid shape based on an anatomical map.
reshape_dataarray_to_grid(data_array, metadata)	Reshapes and transposes a DataArray to grid format based on provided metadata.
test_detect_order()	Tests the detect_order function.
update_anat_map(bad_channels, anat_map)	saves the bad channels in the skip field of the anat_map dataframe.
write_anat_map(anat_map, xml_dict[, grid_shape])