biblio_pdf_fetch_oa for 11 papers missing PDFs/docling fulltext in pixecog bib library.
Context: pixecog has 36 bib entries in bib/pixecog.bib. 25 have docling fulltext extraction. The remaining 11 are missing PDFs entirely (docling_batch reports 0 pending — meaning no PDFs exist to process). Need to fetch open-access PDFs for these 11 papers so docling can extract their fulltext for RAG.
Steps:
1. Run biblio_library_quality() in pixecog to identify the 11 citekeys without fulltext
2. For each, run biblio_pdf_fetch_oa("
Source context: pixecog¶
PixEcog (pixecog): Neuropixels and ECoG dataset and analysis
Recent commits:
80d9ee0 Fix mkdocs build warnings: bibtex config, include-markdown delimiters, dead nav/links, abbreviated citation keys, false-positive citations, merge modkey.bib
0d1ff72 Publish TTL notebook HTMLs (investigate_ttl_artifact, ttl_artifact_removal)
56cc377 [DATALAD] Added subdataset
README:
type: readme
Quick Start for Collaborators¶
Follow this checklist to get started with Pixecog documentation and workflows.
🐀 Pixecog Project — Compact Overview¶
Core principles
- One immutable BIDS raw dataset (
raw/) as the canonical baseline - Each analysis pipeline ha