pipeio_run + pipeio_run_status + pipeio_run_dashboard — managed Snakemake execution via screen

Goal

(promoted from note)

Context

(see source note)

Prompt

Implement managed Snakemake background execution: pipeio_run (launch via screen), pipeio_run_status (query progress from logs), pipeio_run_dashboard (rich summary across flows), pipeio_run_kill (graceful stop). State tracked in .pipeio/runs.json.

Reference capture: 20260325-211151-289605.

Acceptance Criteria

• [ ]

Result

(pending)