Pipeline completeness dashboard: biblio_status¶
After running multiple biblio tools, there's no single view of library health. You have to mentally track which papers have PDFs, which are OpenAlex-resolved, which have docling, grobid, enrichment, etc.
Suggested tool: biblio_status(citekeys?)¶
Returns per-citekey matrix:
citekey | bib | resolved | pdf | docling | grobid | enriched | rag
nitzan_2022_BrainWide | ✓ | ✓ | ✗ | ✗ | ✗ | ✓ | ✗
watson_2016_Network... | ✓ | ✓ | ✗ | ✗ | ✗ | ✓ | ✗
swanson_2025_Topography | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓
biblio_library_quality is close but focuses on bib entry quality, not pipeline completeness.
Source context: pixecog¶
PixEcog (pixecog): Neuropixels and ECoG dataset and analysis
Recent commits:
8dc0d9d Pipeline docs: gitignore docs/pipelines/, relocate hand-authored files
96cd1ec Refactor sharpwaveripple/contracts: extract generic helpers to utils/io, remove pipelines __init__.py
36f9326 Add result note directory and sample note
README:
type: readme
Quick Start for Collaborators¶
Follow this checklist to get started with Pixecog documentation and workflows.
🐀 Pixecog Project — Compact Overview¶
Core principles
- One immutable BIDS raw dataset (
raw/) as the canonical baseline - Each analysis pipeline ha
Related Notes¶
- idea-arash-20260409-210844-158219.md — Directly related: both concern tracking systematic literature processing state across biblio pipeline stages (resolve, PDF, docling, enrichment)
- idea-arash-20260409-231734-553212.md — Closely related: graph_expand → biblio_ingest bridge fills a gap that biblio_status would surface (papers in graph but not yet ingested)
- idea-arash-20260409-214919-989861.md — Related: crossref DOI resolution is one of the pipeline stages (resolved column) that biblio_status would track
- idea-arash-20260326-155537-817950.md — Related: async docling processing is a key biblio pipeline stage tracked in the proposed status matrix
- idea-arash-20260408-035035-245990.md — Conceptually related: both propose structured completeness/QC views — one for biblio pipeline, one for analysis flows