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Pipeline completeness dashboard: biblio_status

After running multiple biblio tools, there's no single view of library health. You have to mentally track which papers have PDFs, which are OpenAlex-resolved, which have docling, grobid, enrichment, etc.

Suggested tool: biblio_status(citekeys?)

Returns per-citekey matrix:

citekey                  | bib | resolved | pdf | docling | grobid | enriched | rag
nitzan_2022_BrainWide    |  ✓  |    ✓     |  ✗  |    ✗    |   ✗    |    ✓     |  ✗
watson_2016_Network...   |  ✓  |    ✓     |  ✗  |    ✗    |   ✗    |    ✓     |  ✗
swanson_2025_Topography  |  ✓  |    ✓     |  ✓  |    ✓    |   ✓    |    ✓     |  ✓
This makes it immediately clear what the next action is. biblio_library_quality is close but focuses on bib entry quality, not pipeline completeness.


Source context: pixecog

PixEcog (pixecog): Neuropixels and ECoG dataset and analysis

Recent commits:

8dc0d9d Pipeline docs: gitignore docs/pipelines/, relocate hand-authored files
96cd1ec Refactor sharpwaveripple/contracts: extract generic helpers to utils/io, remove pipelines __init__.py
36f9326 Add result note directory and sample note

README:


type: readme


Quick Start for Collaborators

Follow this checklist to get started with Pixecog documentation and workflows.

🐀 Pixecog Project — Compact Overview

Core principles

  • One immutable BIDS raw dataset (raw/) as the canonical baseline
  • Each analysis pipeline ha